PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13469_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 324aa    MW: 36055.4 Da    PI: 7.1416
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13469_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.4e-05173192120
                                          EEETTTTEEESSHHHHHHHH CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                          ++Cp C k+F+r  n++ H+
  cra_locus_13469_iso_3_len_969_ver_3 173 FSCPLCFKTFNRYNNMQMHM 192
                                          89*****************9 PP
2zf-C2H214.79e-05257279123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          + C +Cgk F  + + ++H +++
  cra_locus_13469_iso_3_len_969_ver_3 257 FMCRKCGKAFAVRGDWRTHEKNC 279
                                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66173200IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-5173192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.1E-7173195No hitNo description
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576672.1E-7252277No hitNo description
Gene3DG3DSA:3.30.160.602.8E-5255277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549257277IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808257277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
XKPSSSSSSS SLYPNNNFNF YYSNTNNINY NYHHHHQYSS SSSPPSPPIR EALPLLGSSP  60
ARPDPAPAPE DQDSSSSAME VESFSACDGD HDDTVTVALN LGLPNHHPSS LISSDHHADL  120
ISSALISSST DHITDQLEVA ANGILTQAPA STLHKGQYWI PTPAQILIGP TQFSCPLCFK  180
TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAAGCRNNI DHPRAKPLKD  240
FRTLQHIIKE NMXIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH  300
IKAFGNGHAA YGIDSFEEEE EEDX
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014983.11e-142C2H2-type zinc finger family protein
SwissprotQ8W0311e-125ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A061GTW41e-142A0A061GTW4_THECC; C2H2-type zinc finger family protein
STRINGVIT_06s0004g01870.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133